Edinburgh Research Explorer

Dr Tomasz Zielinski

Computational Resource Manager

  1. 2019
  2. Better research by efficient sharing: Evaluation of free management platforms for synthetic biology designs

    Urquiza-garcía, U., Zieliński, T. & Millar, A. J., 20 Jun 2019, In : Synthetic Biology. 4, 1, ysz016.

    Research output: Contribution to journalArticle

  3. Practical steps to digital organism models, from laboratory model species to ‘Crops in silico

    Millar, A. J., Urquiza Garcia, J., Freeman, P., Hume, A., Plotkin, G. D., Sorokina, O., Zardilis, A. & Zielinski, T., 15 Apr 2019, In : Journal of Experimental Botany. 70, 9, p. 2403–2418 16 p., JEXBOT/2018/235879.

    Research output: Contribution to journalReview article

  4. 2017
  5. Guidelines for Genome-Scale Analysis of Biological Rhythms

    Hughes, M. E., Abruzzi, K. C., Allada, R., Anafi, R., Arpat, A. B., Asher, G., Baldi, P., de Bekker, C., Bell-Pedersen, D., Blau, J., Brown, S., Ceriani, M. F., Chen, Z., Chiu, J. C., Cox, J., Crowell, A. M., DeBruyne, J. P., Dijk, D-J., DiTacchio, L., Doyle, F. J. & 73 othersDuffield, G. E., Dunlap, J. C., Eckel-Mahan, K., Esser, K. A., FitzGerald, G. A., Forger, D. B., Francey, L. J., Fu, Y-H., Gachon, F., Gatfield, D., de Goede, P., Golden, S. S., Green, C., Harer, J., Harmer, S., Haspel, J., Hastings, M. H., Herzel, H., Herzog, E. D., Hoffmann, C., Hong, C., Hughey, J. J., Hurley, J. M., de la Iglesia, H. O., Johnson, C., Kay, S. A., Koike, N., Kornacker, K., Kramer, A., Lamia, K., Leise, T., Lewis, S. A., Li, J., Li, X., Liu, A. C., Loros, J. J., Martino, T. A., Menet, J. S., Merrow, M., Millar, A. J., Mockler, T., Naef, F., Nagoshi, E., Nitabach, M. N., Olmedo, M., Nusinow, D. A., Ptáček, L. J., Rand, D., Reddy, A. B., Robles, M. S., Roenneberg, T., Rosbash, M., Ruben, M. D., Rund, S. S. C., Sancar, A., Sassone-Corsi, P., Sehgal, A., Sherrill-Mix, S., Skene, D. J., Storch, K-F., Takahashi, J. S., Ueda, H. R., Wang, H., Weitz, C., Westermark, P. O., Wijnen, H., Xu, Y., Wu, G., Yoo, S-H., Young, M., Zhang, E. E., Zielinski, T. & Hogenesch, J. B., 1 Oct 2017, In : Journal of biological rhythms. 32, 5, p. 380-393 14 p., 748730417728663.

    Research output: Contribution to journalArticle

  6. BioDare2, online data analysis resource

    Zielinski, T. & Millar, A., Jun 2017

    Research output: Non-textual formSoftware

  7. 2016
  8. Practical evaluation of SEEK and OpenBIS for biological data management in SynthSys; second report

    Troup, E., Tomlinson, K., D'Mellow, K., Richards, O., Millar, A. & Zielinski, T., 11 Mar 2016, University of Edinburgh. 13 p.

    Research output: Book/ReportOther report

  9. 2015
  10. Practical evaluation of SEEK and OpenBIS for biological data management in SynthSys; first report.

    Troup, E., Clark, I., Swain, P., Millar, A. & Zielinski, T., 30 Oct 2015, University of Edinburgh. 22 p.

    Research output: Book/ReportOther report

  11. Defining the robust behaviour of the plant clock gene circuit with absolute RNA timeseries and open infrastructure

    Flis, A., Fernández, A. P., Zielinski, T., Mengin, V., Sulpice, R., Stratford, K., Hume, A., Pokhilko, A., Southern, M. M., Seaton, D. D., McWatters, H. G., Stitt, M., Halliday, K. J. & Millar, A. J., 14 Oct 2015, In : Open Biology. 5, 10, 150042.

    Research output: Contribution to journalArticle

  12. 2014
  13. Online period estimation and determination of rhythmicity in circadian data, using the BioDare data infrastructure

    Moore, A., Zielinski, T. & Millar, A., 8 Apr 2014, Plant Circadian Networks: Methods and Protocols. Staiger, D. (ed.). Springer New York, Vol. 1158. p. 13-44 32 p. (Methods in Molecular Biology; vol. 1158).

    Research output: Chapter in Book/Report/Conference proceedingChapter

  14. Strengths and limitations of period estimation methods for circadian data

    Zielinski, T., Moore, A. M., Troup, E., Halliday, K. J. & Millar, A. J., 2014, In : PLoS ONE. 9, 5, e96462.

    Research output: Contribution to journalArticle

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