Activities

• 2015 Ensembl Project Day

  Activity: Participating in or organising an event types › Participation in conference

• National Institutes of Bioscience 2015

  Activity: Participating in or organising an event types › Participation in conference

• The Challenge of Inference from Genome to Phenome

  Activity: Participating in or organising an event types › Participation in conference

• Plant and Animal Genome XXIV

  Activity: Participating in or organising an event types › Participation in conference

• National Institutes of Bioscience 2015

  Activity: Participating in or organising an event types › Participation in conference

Research outputs

• Gene Expression Response to Sea Lice in Atlantic Salmon Skin: RNA Sequencing Comparison Between Resistant and Susceptible Animals

  Research output: Contribution to journal › Article

• Combination of novel and public RNA-seq datasets to generate an mRNA expression atlas for the domestic chicken

  Research output: Contribution to journal › Article

• RecBCD coordinates repair of two ends at a DNA double-strand break, preventing aberrant chromosome amplification

  Research output: Contribution to journal › Article

• Assembly of 913 microbial genomes from metagenomic sequencing of the cow rumen

  Research output: Contribution to journal › Article

• MAGpy: a reproducible pipeline for the downstream analysis of metagenome-assembled genomes (MAGs)

  Research output: Contribution to journal › Article

• Errors in RNA-Seq quantification affect genes of relevance to human disease

  Research output: Contribution to journal › Article

• Embryonic Origin of the Islet1 and Pax6 Neurons of the Chicken Central Extended Amygdala Using Cell Migration Assays and Relation to Different Neuropeptide-Containing Cells

  Research output: Contribution to journal › Article

• Understanding the functional consequence of selectively constrained regions of the chicken genome

  Research output: Contribution to conference › Abstract

• Ixodes scapularis and Ixodes ricinus tick cell lines respond to infection with tick-borne encephalitis virus: transcriptomic and proteomic analysis

  Research output: Contribution to journal › Article

• Frequent, Geographically Structured Heteroplasmy in the Mitochondria of a Flowering Plant, Ribwort Plantain (Plantago lanceolata)

  Research output: Contribution to journal › Article

• Comparative genomics reveals genes significantly associated with woody hosts in the plant pathogen Pseudomonas syringae

  Research output: Contribution to journal › Article

• Genoarchitecture of the extended amygdala in zebra finch, and expression of FoxP2 in cell corridors of different genetic profile

  Research output: Contribution to journal › Article

• Circulating microRNA Profiles during the Bovine Oestrous Cycle

  Research output: Contribution to journal › Article

• The diverse effects of α- and γ-tocopherol on chicken liver transcriptome

  Research output: Contribution to journal › Article

• Proteomes and transcriptomes of the Apicomplexa--where's the message?

  Research output: Contribution to journal › Article

• Effective inhibition of infectious bursal disease virus replication by recombinant avian adeno-associated virus-delivered microRNAs

  Research output: Contribution to journal › Article

• A Sox10 enhancer element common to the otic placode and neural crest is activated by tissue-specific paralogs

  Research output: Contribution to journal › Article

• Down-regulation of mechanisms involved in cell transport and maintenance of mucosal integrity in pigs infected with Lawsonia intracellularis

  Research output: Contribution to journal › Article

• Induction and suppression of tick cell antiviral RNAi responses by tick-borne flaviviruses

  Research output: Contribution to journal › Article

• Low coverage sequencing of two Asian elephant (Elephas maximus) genomes

  Research output: Contribution to journal › Article

• Avian pelvis originates from lateral plate mesoderm and its development requires signals from both ectoderm and paraxial mesoderm

  Research output: Contribution to journal › Article

• Pig bone marrow-derived macrophages resemble human macrophages in their response to bacterial lipopolysaccharide

  Research output: Contribution to journal › Article

• Regeneration of the elbow joint in the developing chick embryo recapitulates development

  Research output: Contribution to journal › Article

• Microarray gene expression profiling of neural tissues in bovine spastic paresis

  Research output: Contribution to journal › Article

• Expressed gene sequences of two variants of sheep interleukin-25

  Research output: Contribution to journal › Article

• Second report on chicken genes and chromosomes 2005

  Research output: Contribution to journal › Article

• Gene expression profiling of hereditary exencephaly in chickens

  Research output: Contribution to journal › Article

• Development and validation of a high density SNP genotyping array for Atlantic salmon (Salmo salar)

  Research output: Contribution to journal › Article

• Resource and hardware options for microarray-based experimentation

  Research output: Contribution to journal › Article

• Expression of cLhx6 and cLhx7/8 suggests a pallido-pedunculo-preoptic origin for the lateral and medial parts of the avian bed nucleus of the stria terminalis

  Research output: Contribution to journal › Article

• Differentially expressed genes for aggressive pecking behaviour in laying hens

  Research output: Contribution to journal › Article

• Gdnf is mitogenic, neurotrophic, and chemoattractive to enteric neural crest cells in the embryonic colon

  Research output: Contribution to journal › Article

• Small interfering RNA-mediated knockdown of chicken interferon-γ expression

  Research output: Contribution to journal › Article

• Resolving the evolution of extant and extinct ruminants with high-throughput phylogenomics

  Research output: Contribution to journal › Article

• Global gene expression profiling of myeloid immune cell subsets in response to in vitro challenge with porcine circovirus 2b

  Research output: Contribution to journal › Article

• Use of GenMAPP and MAPPFinder to analyse pathways involved in chickens infected with the protozoan parasite Eimeria

  Research output: Contribution to journal › Article

• Endogenous Retrotransposition Activates Oncogenic Pathways in Hepatocellular Carcinoma

  Research output: Contribution to journal › Article

• A comprehensive collection of chicken cDNAs

  Research output: Contribution to journal › Article

• Poultry breeding in the post-genomics era

  Research output: Contribution to journal › Article

• Application of chicken microarrays for gene expression analysis in other avian species

  Research output: Contribution to journal › Article

• Chicken cells sense influenza A virus infection through MDA5 and CARDIF signaling involving LGP2

  Research output: Contribution to journal › Article

• The chicken genome and the developmental biologist

  Research output: Contribution to journal › Article

• Biological pathway analysis by ArrayUnlock and Ingenuity Pathway Analysis

  Research output: Contribution to journal › Article

• Analysis of a simulated microarray dataset: comparison of methods for data normalisation and detection of differential expression (open access publication)

  Research output: Contribution to journal › Article

• Nuclear and mitochondrial genetic structure in the Eurasian beaver (Castor fiber) - implications for future reintroductions

  Research output: Contribution to journal › Article

• Quantitative trait loci mapping for canine hip dysplasia and its related traits in UK Labrador Retrievers

  Research output: Contribution to journal › Article

• Major transcriptome re-organisation and abrupt changes in signalling, cell cycle and chromatin regulation at neural differentiation in vivo

  Research output: Contribution to journal › Article

• Genome-wide association study of footrot in Texel sheep

  Research output: Contribution to journal › Article

• Analysis of the early immune response to infection by Infectious Bursal Disease Virus (IBDV) in chickens differing in their resistance to the disease

  Research output: Contribution to journal › Article

• A comparative analysis of host responses to avian influenza infection in ducks and chickens highlights a role for the interferon-induced transmembrane proteins in viral resistance

  Research output: Contribution to journal › Article

• Quality assessment of the current pig genome for variant discovery; and high quality re-assembly using 3rd generation sequencing

  Research output: Contribution to conference › Abstract

• Selective early expression of the orphan nuclear receptor Nr4a2 identifies the claustrum homologue in the avian mesopallium: Impact on sauropsidian/mammalian pallium comparisons

  Research output: Contribution to journal › Article

• Identification and annotation of conserved promoters and macrophage-expressed genes in the pig genome

  Research output: Contribution to journal › Article

• Defining the microglia response during the time course of chronic neurodegeneration

  Research output: Contribution to journal › Article

• viRome: an R package for the visualization and analysis of viral small RNA sequence datasets

  Research output: Non-textual form › Software

• Epithelial, metabolic and innate immunity transcriptomic signatures differentiating the rumen from other sheep and mammalian gastrointestinal tract tissues

  Research output: Contribution to journal › Article

• Genomic prediction of host resistance to sea lice in farmed Atlantic salmon populations

  Research output: Contribution to journal › Article

• First Genome Sequences of Porcine Parvovirus 5 Strains Identified in Polish Pigs

  Research output: Contribution to journal › Article

• 11β-hydroxysteroid dehydrogenase-1 deficiency alters the gut microbiome response to western diet

  Research output: Contribution to journal › Article

• First identification of porcine parvovirus 6 in Poland

  Research output: Contribution to journal › Article

• Differentially-expressed genes during spontaneous lytic switch of Marek’s disease virus in lymphoblastoid cell lines determined by global gene expression profiling

  Research output: Contribution to journal › Article

• Development of a Medium Density Combined-Species SNP Array for Pacific and European Oysters (Crassostrea gigas and Ostrea edulis)

  Research output: Contribution to journal › Article

• Transcriptional profile of breast muscle in heat stressed layers is similar to that of broiler chickens at control temperature

  Research output: Contribution to journal › Article

• The madness of microbiome: Attempting to find consensus “best practice” for 16S microbiome studies

  Research output: Contribution to journal › Article

• A functional FERM domain binding motif in neurofascin

  Research output: Contribution to journal › Article

• Effective inhibition of replication of infectious bursal disease virus by miRNAs delivered by vectors and targeting the VP2 gene

  Research output: Contribution to journal › Article

• Development and validation of an oligonucleotide microarray for immuno-inflammatory genes of ruminants

  Research output: Contribution to journal › Article

• A current perspective on availability of tools, resources and networks for veterinary immunology

  Research output: Contribution to journal › Article

• Genomic selection for growth traits in Pacific oyster (Crassostrea gigas): Potential of low-density marker panels for breeding value prediction

  Research output: Contribution to journal › Article

• Differential gene expression is not required for facultative sex allocation: a transcriptome analysis of brain tissue in the parasitoid wasp Nasonia vitripennis

  Research output: Contribution to journal › Article

• Regional regulation of transcription in the chicken genome

  Research output: Contribution to journal › Article

• Differential response of bovine mammary epithelial cells to Staphylococcus aureus or Escherichia coli agonists of the innate immune system

  Research output: Contribution to journal › Article

• Differences in the transcriptional responses induced by Theileria annulata infection in bovine monocytes derived from resistant and susceptible cattle breeds

  Research output: Contribution to journal › Article

• Digital gene expression analysis of gastrointestinal helminth resistance in Scottish blackface lambs

  Research output: Contribution to journal › Article

• Comparative proteomics and transcriptomics analyses of livers from two different Bos taurus breeds: "Chianina and Holstein Friesian"

  Research output: Contribution to journal › Article

• Chromosomal localization of nine porcine genes encoding transcription factors involved in adipogenesis

  Research output: Contribution to journal › Article

• Comparison of three microarray probe annotation pipelines: differences in strategies and their effect on downstream analysis

  Research output: Contribution to journal › Article

• Complex traits analysis of chicken growth using targeted genetical genomics

  Research output: Contribution to journal › Article

• Pax7 is regulated by cMyb during early neural crest development through a novel enhancer

  Research output: Contribution to journal › Article

• The impact of breed and tissue compartment on the response of pig macrophages to lipopolysaccharide

  Research output: Contribution to journal › Article

• Early response of bovine alveolar macrophages to infection with live and heat-killed Mycobacterium bovis

  Research output: Contribution to journal › Article

• viRome: an R package for the visualization and analysis of viral small RNA sequence datasets

  Research output: Contribution to journal › Article

• Cytogenetic mapping of eight genes encoding fatty acid binding proteins (FABPs) in the pig genome

  Research output: Contribution to journal › Article

• RNAi-based gene silencing in chicken brain development

  Research output: Contribution to journal › Article

• Novel microRNAs encoded by duck enteritis virus

  Research output: Contribution to journal › Article

• Synchronous and asynchronous transmitter release at nicotinic synapses are differentially regulated by postsynaptic PSD-95 proteins

  Research output: Contribution to journal › Article

• The automatic annotation of bacterial genomes

  Research output: Contribution to journal › Article

• Sequencing and Characterisation of an Extensive Atlantic Salmon (Salmo salar L.) MicroRNA Repertoire

  Research output: Contribution to journal › Article

• Clinically failed eggs as a source of normal human embryo stem cells

  Research output: Contribution to journal › Article

• Genomic Prediction for tuberculosis resistance in dairy cattle

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

• Delamination of cells from neurogenic placodes does not involve an epithelial-to-mesenchymal transition

  Research output: Contribution to journal › Article

• Adaptive evolution of Toll-like receptor 5 in domesticated mammals

  Research output: Contribution to journal › Article

• Transcriptional and physiological responses to chronic ACTH treatment by the mouse kidney

  Research output: Contribution to journal › Article

• Transcriptional and pathway analysis in the hypothalamus of newly hatched chicks during fasting and delayed feeding

  Research output: Contribution to journal › Article

• Revealing genetic relationships between compounds affecting boar taint and reproduction in pigs

  Research output: Contribution to journal › Article

• A genomic portrait of the emergence, evolution, and global spread of a methicillin resistant Staphylococcus aureus pandemic

  Research output: Contribution to journal › Article

• The sheep genome reference sequence: a work in progress

  Research output: Contribution to journal › Article

• Resistance and susceptibility to a protozoan parasite of cattle-gene expression differences in macrophages from different breeds of cattle

  Research output: Contribution to journal › Article

• Promotion of avian endothelial cell differentiation by GATA transcription factors

  Research output: Contribution to journal › Article

• Recent advances in cattle functional genomics and their application to beef quality

  Research output: Contribution to journal › Article

• Timing and kinetics of E- to N-cadherin switch during neurulation in the avian embryo

  Research output: Contribution to journal › Article

• Strain-specific copy number variation in the intelectin locus on the 129 mouse chromosome 1

  Research output: Contribution to journal › Article

• sigReannot: an oligo-set re-annotation pipeline based on similarities with the Ensembl transcripts and Unigene clusters

  Research output: Contribution to journal › Article

• Gene array analysis of adrenal glands in broiler chickens following ACTH treatment

  Research output: Contribution to journal › Article

• RNA-seq transcriptome analysis of male and female zebra finch cell lines

  Research output: Contribution to journal › Article

• Secreted Phosphoprotein 1 Expression in Endometrium and Placental Tissues of Hyperprolific Large White and Meishan Gilts

  Research output: Contribution to journal › Article

• Identification and dissection of a key enhancer mediating cranial neural crest specific expression of transcription factor, Ets-1

  Research output: Contribution to journal › Article

• The sheep genome illuminates biology of the rumen and lipid metabolism

  Research output: Contribution to journal › Article

• Sex determination: insights from the chicken

  Research output: Contribution to journal › Article

• Emergence of the chicken as a model organism: implications for agriculture and biology

  Research output: Contribution to journal › Article

• Specific and effective gene knock-down in early chick embryos using morpholinos but not pRFPRNAi vectors

  Research output: Contribution to journal › Article

• A gene expression atlas of the domestic pig

  Research output: Contribution to journal › Article

• Transcriptional profiling of peripheral lymphoid tissue reveals genes and networks linked to SSBP/1 scrapie pathology in sheep

  Research output: Contribution to journal › Article

• A Stratified Transcriptomics Analysis of Polygenic Fat and Lean Mouse Adipose Tissues Identifies Novel Candidate Obesity Genes

  Research output: Contribution to journal › Article

• OligoRAP - an Oligo Re-Annotation Pipeline to improve annotation and estimate target specificity

  Research output: Contribution to journal › Article

• Potential evidence for biotype-specific chemokine profile following BVDV infection of bovine macrophages

  Research output: Contribution to journal › Article

• Comparative Analysis of 3D Expression Patterns of Transcription Factor Genes and Digit Fate Maps in the Developing Chick Wing

  Research output: Contribution to journal › Article

• Experimental evolution, genetic analysis and genome re-sequencing reveal the mutation conferring artemisinin resistance in an isogenic lineage of malaria parasites

  Research output: Contribution to journal › Article

• Definition of the Cattle Killer Cell Ig-like Receptor Gene Family: Comparison with Aurochs and Human Counterparts

  Research output: Contribution to journal › Article

• Gene network and canonical pathway analysis in canine myxomatous mitral valve disease: A microarray study

  Research output: Contribution to journal › Article

• Maternal age effects on myometrial expression of contractile proteins, uterine gene expression, and contractile activity during labor in the rat

  Research output: Contribution to journal › Article

• The transcriptome and regulatory dynamics of the rumen epithelium of sheep

  Research output: Contribution to conference › Abstract

• Identifying low-confidence regions in the Sscrofa10.2 reference genome

  Research output: Contribution to conference › Abstract

• poRe: an R package for the visualization and analysis of nanopore sequencing data

  Research output: Non-textual form › Software

• Genome-Wide Analysis in Swine Associates Corneal Graft Rejection with Donor-Recipient Mismatches in Three Novel Histocompatibility Regions and One Locus Homologous to the Mouse H-3 Locus

  Research output: Contribution to journal › Article

• Macrophage colony-stimulating factor (CSF1) controls monocyte production and maturation and the steady-state size of the liver in pigs

  Research output: Contribution to journal › Article

• The heritability and patterns of DNA methylation in normal human colorectum

  Research output: Contribution to journal › Article

• Rapid identification of bovine MHCI haplotypes in genetically divergent cattle populations Using Next-Generation Sequencing

  Research output: Contribution to journal › Article

• Identification of source and sink populations for the emergence and global spread of the East-Asia clone of Community-Associated MRSA

  Research output: Contribution to journal › Article

• Kinetic CRAC uncovers a role for Nab3 in determining gene expression profiles during stress

  Research output: Contribution to journal › Article

• poRe GUIs for parallel and real-time processing of MinION sequence data

  Research output: Contribution to journal › Article

• Genotype Imputation to Improve the Cost-Efficiency of Genomic Selection in Farmed Atlantic Salmon

  Research output: Contribution to journal › Article

• Aedes aegypti Piwi4 Is a Noncanonical PIWI Protein Involved in Antiviral Responses

  Research output: Contribution to journal › Article

• C9ORF72 repeat expansion causes vulnerability of motor neurons to Ca2+-permeable AMPA receptor-mediated excitotoxicity

  Research output: Contribution to journal › Article

• Quantifying the Survival of Multiple Salmonella enterica Serovars in vivo using Massively-parallel Whole Genome Sequencing to Predict Zoonotic Risk

  Research output: Contribution to journal › Article

• Maturation of the 90S pre-ribosome requires Mrd1 dependent U3 snoRNA and 35S pre-rRNA structural rearrangements

  Research output: Contribution to journal › Article

• An avian retrovirus uses canonical expression and processing mechanisms to generate viral microRNA

  Research output: Contribution to journal › Article

• Macrophage transcriptional responses following in vitro infection with a highly virulent African swine fever virus isolate

  Research output: Contribution to journal › Article

• Genomic regions associated with ventro-cranial chronic pleuritis in pig

  Research output: Contribution to journal › Article

• Functional genomics in farm animals - Microarray analysis

  Research output: Contribution to journal › Article

• Irx3 and Pax6 establish differential competence for Shh-mediated induction of GABAergic and glutamatergic neurons of the thalamus

  Research output: Contribution to journal › Article

• Identification of novel regulators of osteoblast matrix mineralization by time series transcriptional profiling

  Research output: Contribution to journal › Article

• The early phase transcriptome of bovine monocyte-derived macrophages infected with Staphylococcus aureus in vitro

  Research output: Contribution to journal › Article

• Ex vivo electroporation of retinal cells: a novel, high efficiency method for functional studies in primary retinal cultures

  Research output: Contribution to journal › Article

• Integrating technologies for comparing 3D gene expression domains in the developing chick limb

  Research output: Contribution to journal › Article

• Differential expression of LIM-homeodomain factors in Cajal-Retzius cells of primates, rodents, and birds

  Research output: Contribution to journal › Article

• Genetics of canine anal furunculosis in the German shepherd dog

  Research output: Contribution to journal › Article

• Multiple cell adhesion molecules shaping a complex nicotinic synapse on neurons

  Research output: Contribution to journal › Article

• Effect of organically and conventionally produced diets on jejunal gene expression in chickens

  Research output: Contribution to journal › Article

• Receptor tyrosine phosphatase PTPγ is a regulator of spinal cord neurogenesis

  Research output: Contribution to journal › Article

• Comparison of mRNA for IGFs and their binding proteins in the oviduct during the peri-oestrous period between dairy heifers and lactating cows

  Research output: Contribution to journal › Article

• Analysis of nephric duct specification in the avian embryo

  Research output: Contribution to journal › Article

• Decreased expression of the satiety signal receptor CCKAR is responsible for increased growth and body weight during the domestication of chickens

  Research output: Contribution to journal › Article

• Molecular Longitudinal Tracking of Mycobacterium abscessus spp. during Chronic Infection of the Human Lung

  Research output: Contribution to journal › Article

• The expanding role of microarrays in the investigation of macrophage responses to pathogens.

  Research output: Contribution to journal › Article

• Identification of Melatonin-Regulated Genes in the Ovine Pituitary Pars Tuberalis, a Target Site for Seasonal Hormone Control

  Research output: Contribution to journal › Article

• Molecular tracing of the emergence, adaptation, and transmission of hospital-associated methicillin-resistant Staphylococcus aureus

  Research output: Contribution to journal › Article

• Chick gene frenzy

  Research output: Contribution to journal › Article

• Differences in the early response of hatchlings of different chicken breeding lines to Salmonella enterica serovar Enteritidis infection

  Research output: Contribution to journal › Article

• Construction of a normalized Bos taurus and Bos indicus macrophage specific cDNA library.

  Research output: Contribution to journal › Article

• Analysis of the real EADGENE data set: Multivariate approaches and post analysis (Open Access publication)

  Research output: Contribution to journal › Article

• Protein deiminases: new players in the developmentally regulated loss of neural regenerative ability

  Research output: Contribution to journal › Article

• Optimal Elevation of β-Cell 11β-Hydroxysteroid Dehydrogenase Type 1 Is a Compensatory Mechanism That Prevents High-Fat Diet–Induced β-Cell Failure

  Research output: Contribution to journal › Article

• Direct functional consequences of ZRS enhancer mutation combine with secondary long range SHH signalling effects to cause preaxial polydactyly

  Research output: Contribution to journal › Article

• Global gene expression analysis of canine osteosarcoma stem cells reveals a novel role for COX-2 in tumour initiation

  Research output: Contribution to journal › Article

• FGF regulated gene-expression and neuronal differentiation in the developing midbrain-hindbrain region

  Research output: Contribution to journal › Article

• Facilitating functional annotation of chicken microarray data

  Research output: Contribution to journal › Article

• Identification of novel candidate genes for follicle selection in the broiler breeder ovary

  Research output: Contribution to journal › Article

• Genomic prediction of traits related to canine hip dysplasia

  Research output: Contribution to journal › Article

• The antiviral RNAi response in vector and non-vector cells against orthobunyaviruses

  Research output: Contribution to journal › Article

• Genomic Analysis of DNA Double-Strand Break Repair in Escherichia coli

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

• Balancing selection at a premature stop mutation in the myostatin gene underlies a recessive leg weakness syndrome in pigs

  Research output: Contribution to journal › Article

• Livestock 2.0 – genome editing for fitter, healthier, and more productive farmed animals

  Research output: Contribution to journal › Article

• Characterisation of the UK honey bee metagenome

  Research output: Contribution to journal › Article

• Illuminating the future of DNA sequencing

  Research output: Contribution to journal › Comment/debate

• Comparative mapping in farm animals

  Research output: Contribution to journal › Article

• FatJ acts via the Hippo mediator Yap1 to restrict the size of neural progenitor cell pools

  Research output: Contribution to journal › Article

• A genome-wide linkage study in families with major depression and co-morbid unexplained swelling

  Research output: Contribution to journal › Article

• Transcriptional profiling of cecal gene expression in probiotic- and Salmonella-challenged neonatal chicks

  Research output: Contribution to journal › Article

• Pivotal Advance: Avian colony-stimulating factor 1 (CSF-1), interleukin-34 (IL-34), and CSF-1 receptor genes and gene products

  Research output: Contribution to journal › Article

• Raldh3 gene expression pattern in the developing chicken inner ear

  Research output: Contribution to journal › Article

• Expression of the short stature homeobox gene Shox is restricted by proximal and distal signals in chick limb buds and affects the length of skeletal elements

  Research output: Contribution to journal › Article

• HSP90B1, a thyroid hormone-responsive heat shock protein gene involved in photoperiodic signaling

  Research output: Contribution to journal › Article

• Studies on the inhibition of feline EGFR in squamous cell carcinoma: Enhancement of radiosensitivity and rescue of resistance to small molecule inhibitors

  Research output: Contribution to journal › Article

• The transcription factor Pitx2 positions the embryonic axis and regulates twinning

  Research output: Contribution to journal › Article

• Comparison of eleven methods for genomic DNA extraction suitable for large-scale whole-genome genotyping and long-term DNA banking using blood samples

  Research output: Contribution to journal › Article

• The 3'-5' exoribonuclease Dis3 regulates the expression of specific microRNAs in Drosophila wing imaginal discs

  Research output: Contribution to journal › Article

• Complete Genome Sequence of a Pathogenic Genotype 1 Subtype 3 Porcine Reproductive and Respiratory Syndrome Virus (Strain SU1-Bel) from Pig Primary Tissue

  Research output: Contribution to journal › Article

• Changes in gene expression and cell shape characterise stages of epibranchial placode-derived neuron maturation in the chick

  Research output: Contribution to journal › Article

• The ability of the encephalitic arbovirus Semliki Forest virus to cross the blood brain barrier is determined by the charge of the E2 glycoprotein

  Research output: Contribution to journal › Article

• Myosin-II-mediated cell shape changes and cell intercalation contribute to primitive streak formation

  Research output: Contribution to journal › Article

• Integrin signalling regulates the expansion of neuroepithelial progenitors and neurogenesis via Wnt7a and Decorin

  Research output: Contribution to journal › Article

• Bovine Host Genetic Variation Influences Rumen Microbial Methane Production with Best Selection Criterion for Low Methane Emitting and Efficiently Feed Converting Hosts based on Metagenomic Gene Abundance

  Research output: Contribution to journal › Article

• Live and inactivated Salmonella enterica serovar Typhimurium stimulate similar but distinct transcriptome profiles in bovine macrophages and dendritic cells

  Research output: Contribution to journal › Article

• The incredible complexity of RNA splicing

  Research output: Contribution to journal › Article

• A network analysis of methane and feed conversion genes in the rumen microbial community

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

• RNA interference restricts Rift Valley fever virus in multiple insect systems

  Research output: Contribution to journal › Article

• Complete genome sequences of elephant endotheliotropic herpesviruses 1A and 1B determined directly from fatal cases

  Research output: Contribution to journal › Article

• Expression pattern of Dll4 during chick embryogenesis

  Research output: Contribution to journal › Article

• Adaptive Evolution of Staphylococcus aureus during Chronic Endobronchial Infection of a Cystic Fibrosis Patient

  Research output: Contribution to journal › Article

• Livestock genomics: bridging the gap between mice and men

  Research output: Contribution to journal › Article

• Negative energy balance alters global gene expression and immune responses in the uterus of postpartum dairy cows

  Research output: Contribution to journal › Article

• Olfactory and amygdalar structures of the chicken ventral pallium based on the combinatorial expression patterns of LIM and other developmental regulatory genes

  Research output: Contribution to journal › Article

• Development of a cDNA microarray for the measurement of gene expression in the sheep scab mite Psoroptes ovis

  Research output: Contribution to journal › Article

• Development and validation of a bovine macrophage specific cDNA microarray

  Research output: Contribution to journal › Article

• Using genomic approaches to unravel livestock (host)-tick-pathogen interactions

  Research output: Contribution to journal › Article

• An MHC component to kin recognition and mate choice in birds: predictions, progress, and prospects

  Research output: Contribution to journal › Article

• Focused microarrays as a method to evaluate subtle changes in gene expression

  Research output: Contribution to journal › Article

• Development of reagents to study the turkey's immune response: Identification and molecular cloning of turkey CD4, CD8alpha and CD28

  Research output: Contribution to journal › Article

• Comparative Analysis of Monocyte Subsets in the Pig

  Research output: Contribution to journal › Article

• Generation of the podocyte and tubular components of an amniote kidney: timing of specification and a role for Wnt signaling

  Research output: Contribution to journal › Article

• Determining the role of mononuclear phagocytes in prion neuroinvasion from the skin

  Research output: Contribution to journal › Article

• Genomic variation in macrophage-cultured European porcine reproductive and respiratory syndrome virus Olot/91 revealed using ultra-deep next generation sequencing

  Research output: Contribution to journal › Article

• Subdivisions and derivatives of the chicken subpallium based on expression of LIM and other regulatory genes and markers of neuron subpopulations during development

  Research output: Contribution to journal › Article

• Meta-analysis of chicken-salmonella infection experiments

  Research output: Contribution to journal › Article

• Somatic retrotransposition alters the genetic landscape of the human brain

  Research output: Contribution to journal › Article

• Chicken genomics charts a path to the genome sequence

  Research output: Contribution to journal › Article

• The chicken talpid3 gene encodes a novel protein essential for Hedgehog signaling

  Research output: Contribution to journal › Article

• A novel role for Pax6 in the segmental organization of the hindbrain

  Research output: Contribution to journal › Article

• New hypotheses on the function of the avian shell gland derived from microarray analysis comparing tissue from juvenile and sexually mature hens

  Research output: Contribution to journal › Article

• Poultry genomics puts meat on the table

  Research output: Contribution to journal › Article

• A description of the origins, design and performance of the TRAITS-SGP Atlantic salmon Salmo salar L. cDNA microarray

  Research output: Contribution to journal › Article

• Escherichia coli- and Staphylococcus aureus - induced mastitis differentially modulate transcriptional responses in neighbouring uninfected bovine mammary gland quarters

  Research output: Contribution to journal › Article

• Evidence that the limb bud ectoderm is required for survival of the underlying mesoderm

  Research output: Contribution to journal › Article

• Chronic ammonia exposure does not influence hepatic gene expression in growing pigs

  Research output: Contribution to journal › Article

• Cloning, annotation and developmental expression of the chicken intestinal MUC2 gene

  Research output: Contribution to journal › Article

• Microsatellite polymorphism and its association with body weight and selected morphometrics of farm red fox (Vulpes vulpes L.)

  Research output: Contribution to journal › Article

• Analysis of severe feather pecking behavior in a high feather pecking selection line

  Research output: Contribution to journal › Article

• The EADGENE Microarray Data Analysis Workshop (open access publication)

  Research output: Contribution to journal › Article

• Functional analysis of the porcine USP18 and its role during porcine arterivirus replication

  Research output: Contribution to journal › Article

• Linkage maps of the Atlantic salmon (Salmo salar) genome derived from RAD sequencing

  Research output: Contribution to journal › Article

• SDF-1 Chemokine Signalling Modulates the Apoptotic Responses to Iron Deprivation of Clathrin-Depleted DT40 Cells

  Research output: Contribution to journal › Article

• Beyond the whole genome consensus: Unravelling of PRRSV phylogenomics using next generation sequencing technologies

  Research output: Contribution to journal › Article

• Time-scaled evolutionary analysis of the transmission and antibiotic resistance dynamics of Staphylococcus aureus CC398

  Research output: Contribution to journal › Article

• Transcriptome Profiling of Granulosa and Theca Cells During Dominant Follicle Development in the Horse

  Research output: Contribution to journal › Article

• Oxidative stress response in liver of broiler chickens supplemented with n-3 PUFA-rich linseed oil

  Research output: Contribution to journal › Article

• Enteric neural crest cells regulate vertebrate stomach patterning and differentiation

  Research output: Contribution to journal › Article

• GABARAP is a Determinant of Apoptosis in Growth-Arrested Chicken Embryo Fibroblasts

  Research output: Contribution to journal › Article

• Cell-Autonomous Sex Differences in Gene Expression in Chicken Bone Marrow-Derived Macrophages

  Research output: Contribution to journal › Article

• Microglial brain region−dependent diversity and selective regional sensitivities to aging

  Research output: Contribution to journal › Article

• Global Transcriptomic Profiling of Bovine Endometrial Immune Response In Vitro. I. Effect of Lipopolysaccharide on Innate Immunity

  Research output: Contribution to journal › Article

• Developmental pathways and endothelial to mesenchymal transition in canine myxomatous mitral valve disease

  Research output: Contribution to journal › Article

• Pea3 determines the isthmus region at the downstream of Fgf8-Ras-ERK signaling pathway

  Research output: Contribution to journal › Article

• Identification and Characterization of Two Novel RNA Viruses from Anopheles gambiae Species Complex Mosquitoes

  Research output: Contribution to journal › Article

• A molecular palaeobiological exploration of arthropod terrestrialization

  Research output: Contribution to journal › Article

• Neurons and neuronal activity control gene expression in astrocytes to regulate their development and metabolism

  Research output: Contribution to journal › Article

• Cross-species inference of long non-coding RNAs greatly expands the ruminant transcriptome

  Research output: Contribution to journal › Article

• Vru (Sub0144) controls expression of proven and putative virulence determinants and alters the ability of Streptococcus uberis to cause disease in dairy cattle

  Research output: Contribution to journal › Article

• Genome Sequences of Salmonella enterica Serovar Typhimurium, Choleraesuis, Dublin, and Gallinarum Strains of Well- Defined Virulence in Food-Producing Animals

  Research output: Contribution to journal › Article

• Meta4 a web application for sharing and annotating metagenomic gene predictions using web services

  Research output: Contribution to journal › Article

• So you want to be a computational biologist?

  Research output: Contribution to journal › Article

• Mycobacterium leprae genomes from a British medieval leprosy hospital: towards understanding an ancient epidemic

  Research output: Contribution to journal › Article

• Mapping quantitative trait loci and identification of genes that control fatness in poultry

  Research output: Contribution to journal › Article

• Identification of immune-relevant genes from atlantic salmon using suppression subtractive hybridization

  Research output: Contribution to journal › Article

• Probing the substrate specificities of human PHOSPHO1 and PHOSPHO2

  Research output: Contribution to journal › Article

• Using transcriptome profiling to characterize QTL regions on chicken chromosome 5

  Research output: Contribution to journal › Article

• Regulation of LPCAT3 by LXR

  Research output: Contribution to journal › Article

• Pregnancy in Obese Mice Protects Selectively against Visceral Adiposity and Is Associated with Increased Adipocyte Estrogen Signalling

  Research output: Contribution to journal › Article

• Effects of contact dermatitis on hepatic gene expression in broilers

  Research output: Contribution to journal › Article

• eChickAtlas: An introduction to the database

  Research output: Contribution to journal › Article

• Subpopulation of proepicardial cells is derived from the somatic mesoderm in the chick embryo

  Research output: Contribution to journal › Article

• Avian genomics in the 21st century

  Research output: Contribution to journal › Article

• Functional genomics of the chicken--a model organism

  Research output: Contribution to journal › Article

• Post-translational regulation of Crmp in developing and regenerating chick spinal cord

  Research output: Contribution to journal › Article

• Functional genomics of the muscle response to restraint and transport in chickens

  Research output: Contribution to journal › Article

• Inhibition of infectious bursal disease virus infection by artificial microRNAs targeting chicken heat-shock protein 90

  Research output: Contribution to journal › Article

• Experimental approaches for gene regulatory network construction: the chick as a model system

  Research output: Contribution to journal › Article

• p75NTR: an enhancer of fenretinide toxicity in neuroblastoma

  Research output: Contribution to journal › Article

• IMAD: flexible annotation of microarray sequences

  Research output: Contribution to journal › Article

• Global gene expression analysis of chicken caecal response to Campylobacter jejuni

  Research output: Contribution to journal › Article

• Extending glacial refugia for a European tree: genetic markers show that Iberian populations of white elm are native relicts and not introductions

  Research output: Contribution to journal › Article

• Elevated O-GlcNAc levels activate epigenetically repressed genes and delay mouse ES cell differentiation without affecting naïve to primed cell transition

  Research output: Contribution to journal › Article

• Genetic variation and responses to vaccines.

  Research output: Contribution to journal › Article

• The EADGENE Microarray Data Analysis Workshop

  Research output: Contribution to journal › Article

• Interferon type I and type II responses in an Atlantic salmon (Salmo salar) SHK-1 cell line by the salmon TRAITS/SGP microarray

  Research output: Contribution to journal › Article

• Methods for interpreting lists of affected genes obtained in a DNA microarray experiment

  Research output: Contribution to journal › Article

• A high density recombination map of the pig reveals a correlation between sex-specific recombination and GC content

  Research output: Contribution to journal › Article

• Development of a chicken 5 K microarray targeted towards immune function

  Research output: Contribution to journal › Article

• Quantitative analysis of MicroRNAs in vaccinia virus infection reveals diversity in their susceptibility to modification and suppression

  Research output: Contribution to journal › Article

• Broadening the definition of a bioinformatician

  Research output: Contribution to journal › Article

• Transcriptome analysis of Bombyx mori Larval Midgut during Persistent and Pathogenic Cytoplasmic Polyhedrosis virus infection

  Research output: Contribution to journal › Article

• The development and maintenance of the mononuclear phagocyte system of the chick is controlled by signals from the macrophage colony-stimulating factor (CSF1) receptor

  Research output: Contribution to journal › Article

• An Invertron-Like Linear Plasmid Mediates Intracellular Survival and Virulence in Bovine Isolates of Rhodococcus equi.

  Research output: Contribution to journal › Article

• GOBLET: The Global Organisation for Bioinformatics Learning, Education and Training

  Research output: Contribution to journal › Article

• A gene expression atlas in domestic water buffalo

  Research output: Contribution to conference › Abstract

• Identification of STAM1 as a novel effector of ventral projection of spinal motor neurons

  Research output: Contribution to journal › Article

• Construction and annotation of a high density SNP linkage map of the Atlantic salmon (Salmo salar) genome

  Research output: Contribution to journal › Article

• GO-FAANG meeting: a Gathering On Functional Annotation of Animal Genomes

  Research output: Contribution to journal › Article

• Hypoxia promotes production of neural crest cells in the embryonic head

  Research output: Contribution to journal › Article

• Specialized box C/D snoRNPs act as antisense guides to target RNA base acetylation

  Research output: Contribution to journal › Article

• Cell type specific, traceable gene silencing for functional gene analysis during vertebrate neural development

  Research output: Contribution to journal › Article

• Differential hepatic gene expression in the broiler chicken in response to the combined stressors of food withdrawal, catching and transport at the end of production

  Research output: Contribution to journal › Article

• Development of a high density 600K SNP genotyping array for chicken

  Research output: Contribution to journal › Article

• Differential gene expression during smoltification of Atlantic salmon (Salmo salar L.): a first large-scale microarray study

  Research output: Contribution to journal › Article

• Novel gene expression responses in the ovine abomasal mucosa to infection with the gastric nematode Teladorsagia circumcincta

  Research output: Contribution to journal › Article

• Characterisation of QTL-linked and genome-wide restriction site-associated DNA (RAD) markers in farmed Atlantic salmon

  Research output: Contribution to journal › Article

• Differential Ly-6C expression identifies the recruited macrophage phenotype, which orchestrates the regression of murine liver fibrosis

  Research output: Contribution to journal › Article

• Assessment of insert sizes and adapter content in fastq data from NexteraXT libraries

  Research output: Contribution to journal › Article

• Gene loss-of-function and live imaging in chick embryos

  Research output: Contribution to journal › Article

• Host gene expression changes in cattle infected with Alcelaphine herpesvirus 1

  Research output: Contribution to journal › Article

• Chicken hemogen homolog is involved in the chicken-specific sex-determining mechanism

  Research output: Contribution to journal › Article

• A SNP in the 5' flanking region of the myostatin-1b gene is associated with harvest traits in Atlantic salmon (Salmo salar)

  Research output: Contribution to journal › Article

• A novel function of DELTA-NOTCH signalling mediates the transition from proliferation to neurogenesis in neural progenitor cells

  Research output: Contribution to journal › Article

• In-depth global analysis of transcript abundance levels in porcine alveolar macrophages following infection with porcine reproductive and respiratory syndrome virus

  Research output: Contribution to journal › Article

• Hox expression in the American alligator and evolution of archosaurian axial patterning

  Research output: Contribution to journal › Article

• Reduced variance of gene expression at numerous loci in a population of chickens selected for high feather pecking

  Research output: Contribution to journal › Article

• Complex trait subtypes identification using transcriptome profiling reveals an interaction between two QTL affecting adiposity in chicken

  Research output: Contribution to journal › Article

• High throughput analysis reveals dissociable gene expression profiles in two independent neural systems involved in the regulation of social behavior

  Research output: Contribution to journal › Article

• Hoxa-5 acts in segmented somites to regulate cervical vertebral morphology

  Research output: Contribution to journal › Article

• Song exposure regulates known and novel microRNAs in the zebra finch auditory forebrain

  Research output: Contribution to journal › Article

• Genome-wide transcriptomic analysis of intestinal tissue to assess the impact of nutrition and a secondary nematode challenge in lactating rats

  Research output: Contribution to journal › Article

• Next-Generation Sequencing: Application in Liver Cancer-Past, Present and Future?

  Research output: Contribution to journal › Article

• Salmonella enterica Serovar Typhimurium Colonizing the Lumen of the Chicken Intestine Grows Slowly and Upregulates a Unique Set of Virulence and Metabolism Genes

  Research output: Contribution to journal › Article

• Genetical genomics: combining gene expression with marker genotypes in poultry

  Research output: Contribution to journal › Article

• Insulin immuno-neutralization in fed chickens: effects on liver and muscle transcriptome

  Research output: Contribution to journal › Article

• Microarray resources for genetic and genomic studies in chicken: a review

  Research output: Contribution to journal › Article

• Genome-wide association study identifies novel loci associated with resistance to bovine tuberculosis

  Research output: Contribution to journal › Article

• Diet × genotype interactions in hepatic cholesterol and lipoprotein metabolism in Atlantic salmon (Salmo salar) in response to replacement of dietary fish oil with vegetable oil

  Research output: Contribution to journal › Article

• Big biology: The 'omes puzzle

  Research output: Contribution to journal › Article

• Analysis of the real EADGENE data set: Comparison of methods and guidelines for data normalisation and selection of differentially expressed genes (Open Access publication)

  Research output: Contribution to journal › Article

• poRe: an R package for the visualization and analysis of nanopore sequencing data

  Research output: Contribution to journal › Article

• MicroRNA-100-5p indirectly modulates the expression of Il6, Ptgs1/2 and Tlr4 mRNA in the mouse follicular dendritic cell-like cell line, FL-Y: Expression of mmu-miR-100-5p by FL-Y cells

  Research output: Contribution to journal › Article

• Eic1 links Mis18 with the CCAN/Mis6/Ctf19 complex to promote CENP-A assembly

  Research output: Contribution to journal › Article

• Quality assessment and control of high-throughput sequencing data

  Research output: Contribution to journal › Editorial

• Single nucleotide polymorphisms in the insulin-like growth factor 1 (IGF1) gene are associated with growth-related traits in farmed Atlantic salmon

  Research output: Contribution to journal › Article

• The GOBLET Training Portal: A Global Repository of Bioinformatics Training Materials, Courses and Trainers

  Research output: Contribution to journal › Article

• Diversity and Community Composition of Methanogenic Archaea in the Rumen of Scottish Upland Sheep Assessed by Different Methods

  Research output: Contribution to journal › Article

• Analysis and Application of Viroid-Specific Small RNAs Generated by Viroid-Inducing RNA Silencing

  Research output: Contribution to journal › Article

• When will 'open science' become simply 'science'?

  Research output: Contribution to journal › Comment/debate

• Lipid metabolism and Type VII secretion systems dominate the genome scale virulence profile of Mycobacterium tuberculosis in human dendritic cells

  Research output: Contribution to journal › Article

• The early immune response to infection of chickens with Infectious Bronchitis Virus (IBV) in susceptible and resistant birds

  Research output: Contribution to journal › Article

• The rumen microbial metagenome associated with high methane production in cattle

  Research output: Contribution to journal › Article

• Genetic loci inherited from hens lacking maternal behaviour both inhibit and paradoxically promote this behaviour

  Research output: Contribution to journal › Article

• Genomic evaluation, breed identification, and population structure of Guernsey cattle in North America, Great Britain, and the Isle of Guernsey

  Research output: Contribution to journal › Article

• Circulating Plasma microRNAs can differentiate Human Sepsis and Systemic Inflammatory Response Syndrome (SIRS)

  Research output: Contribution to journal › Article

• Activation of gga-miR-155 by reticuloendotheliosis virus T strain and its contribution to transformation

  Research output: Contribution to journal › Article

• Serological and molecular epidemiology of canine adenovirus type 1 in red foxes (Vulpes vulpes) in the United Kingdom

  Research output: Contribution to journal › Article

• Tandem amplification of SCCmec can drive high level methicillin resistance in MRSA

  Research output: Contribution to journal › Article

• MicroRNA expression profiles in avian haemopoietic cells

  Research output: Contribution to journal › Article

• Knockdown of piRNA pathway proteins results in enhanced Semliki Forest virus production in mosquito cells

  Research output: Contribution to journal › Article

• RNA Interference Targets Arbovirus Replication in Culicoides Cells

  Research output: Contribution to journal › Article

• Radiation hybrid mapping of 18 positional and physiological candidate genes for arthrogryposis multiplex congenita on porcine chromosome 5

  Research output: Contribution to journal › Article

• Influence of negative energy balance on cyclicity and fertility in the high producing dairy cow

  Research output: Contribution to journal › Article

• Differential expression of sphingosine-1-phosphate receptors 1-5 in the developing nervous system

  Research output: Contribution to journal › Article

• Strengthening insights into host responses to mastitis infection in ruminants by combining heterogeneous microarray data sources

  Research output: Contribution to journal › Article

• Chicken genome: new tools and concepts

  Research output: Contribution to journal › Article

• Transcriptome analysis of porcine PBMCs after in vitro stimulation by LPS or PMA/ionomycin using an expression array targeting the pig immune response

  Research output: Contribution to journal › Article

• Similarities and differences in the forebrain expression of Lhx1 and Lhx5 between chicken and mouse: Insights for understanding telencephalic development and evolution

  Research output: Contribution to journal › Article

• A robust system for RNA interference in the chicken using a modified microRNA operon

  Research output: Contribution to journal › Article

• FGF signaling transforms non-neural ectoderm into neural crest

  Research output: Contribution to journal › Article

• Upregulation of IGF2 expression during vascular calcification

  Research output: Contribution to journal › Article

• Transcriptome analysis for the chicken based on 19,626 finished cDNA sequences and 485,337 expressed sequence tags

  Research output: Contribution to journal › Article

• Recent human-to-poultry host jump, adaptation, and pandemic spread of Staphylococcus aureus

  Research output: Contribution to journal › Article

• Notch and bone morphogenetic protein differentially act on dermomyotome cells to generate endothelium, smooth, and striated muscle

  Research output: Contribution to journal › Article

• Gene Expression Changes Associated with the Airway Wall Response to Injury

  Research output: Contribution to journal › Article

• A regulatory network involving Foxn4, Mash1 and delta-like 4/Notch1 generates V2a and V2b spinal interneurons from a common progenitor pool

  Research output: Contribution to journal › Article

• Gain- and loss-of-function approaches in the chick embryo

  Research output: Contribution to journal › Article

• Hox gene colinear expression in the avian medulla oblongata is correlated with pseudorhombomeric domains

  Research output: Contribution to journal › Article

• The spatial repositioning of adipogenesis genes is correlated with their expression status in a porcine mesenchymal stem cell adipogenesis model system

  Research output: Contribution to journal › Article

• Gene expression in chicken reveals correlation with structural genomic features and conserved patterns of transcription in the terrestrial vertebrates

  Research output: Contribution to journal › Article

• Development and experimental validation of a 20K Atlantic cod (Gadus morhua) oligonucleotide microarray based on a collection of over 150,000 ESTs

  Research output: Contribution to journal › Article

• FGF signalling through RAS/MAPK and PI3K pathways regulates cell movement and gene expression in the chicken primitive streak without affecting E-cadherin expression

  Research output: Contribution to journal › Article

• Pleiotropic action of AP-1 in v-Src-transformed cells

  Research output: Contribution to journal › Article

• Seasonal changes in patterns of gene expression in avian song control brain regions

  Research output: Contribution to journal › Article

• Cyclin-dependent kinases 7 and 9 specifically regulate neutrophil transcription and their inhibition drives apoptosis to promote resolution of inflammation

  Research output: Contribution to journal › Article

• Antiviral RNA Interference Responses Induced by Semliki Forest Virus Infection of Mosquito Cells: Characterization, Origin, and Frequency-Dependent Functions of Virus-Derived Small Interfering RNAs

  Research output: Contribution to journal › Article

• The genes encoding E-selectin (SELE) and lymphotactin (SCYC1) lie on separate chicken chromosomes although they are closely linked in human and mouse

  Research output: Contribution to journal › Article

• Genetics. Chicken genome--science nuggets to come soon

  Research output: Contribution to journal › Article

• Genetical genomics in livestock: potentials and pitfalls

  Research output: Contribution to journal › Article

• Identification of genes downstream of the Shh signalling in the developing chick wing and syn-expressed with Hoxd13 using microarray and 3D computational analysis

  Research output: Contribution to journal › Article

• Genetic and antigenic characterization of complete genomes of Type 1 Porcine Reproductive and Respiratory Syndrome viruses (PRRSV) isolated in Denmark over a period of 10 years

  Research output: Contribution to journal › Article

• Chicken genome: current status and future opportunities

  Research output: Contribution to journal › Article

• Gene discovery: macroarrays and microarrays

  Research output: Contribution to journal › Article

• Transcriptome profiling of the feeding-to-fasting transition in chicken liver

  Research output: Contribution to journal › Article

• Genoarchitectonic profile of developing nuclear groups in the chicken pretectum

  Research output: Contribution to journal › Article

• Early host response in the mammary gland after experimental Streptococcus uberis challenge in heifers

  Research output: Contribution to journal › Article

• Design and development of exome capture sequencing for the domestic pig (Sus scrofa)

  Research output: Contribution to journal › Article

• Analysis of talpid3 and wild-type chicken embryos reveals roles for Hedgehog signalling in development of the limb bud vasculature

  Research output: Contribution to journal › Article

• Functional genomics in chickens: development of integrated-systems microarrays for transcriptional profiling and discovery of regulatory pathways

  Research output: Contribution to journal › Article

• Combinatorial expression of Lef1, Lhx2, Lhx5, Lhx9, Lmo3, Lmo4, and Prox1 helps to identify comparable subdivisions in the developing hippocampal formation of mouse and chicken

  Research output: Contribution to journal › Article

• Draft Genome Sequence of Escherichia coli MS499, Isolated from the Infected Uterus of a Postpartum Cow with Metritis

  Research output: Contribution to journal › Article

• High-throughput sequencing for the study of bacterial pathogen biology

  Research output: Contribution to journal › Article

• Gene flow in environmental Legionella pneumophila leads to genetic and pathogenic heterogeneity within a Legionnaires' disease outbreak

  Research output: Contribution to journal › Article

• Successful test launch for nanopore sequencing

  Research output: Contribution to journal › Comment/debate

• Exome Sequencing: Current and Future Perspectives

  Research output: Contribution to journal › Article

• A single natural nucleotide mutation alters bacterial pathogen host tropism

  Research output: Contribution to journal › Article

• Functional classification of 15 million SNPs detected from diverse chicken populations

  Research output: Contribution to journal › Article

• Enhancer Turnover Is Associated with a Divergent Transcriptional Response to Glucocorticoid in Mouse and Human Macrophages

  Research output: Contribution to journal › Article

• Identification of low-confidence regions in the pig reference genome (Sscrofa10.2)

  Research output: Contribution to journal › Article

• Relationships between Circulating Urea Concentrations and Endometrial Function in Postpartum dairy cows

  Research output: Contribution to journal › Article

• Ensembl Genomes 2016: more genomes, more complexity

  Research output: Contribution to journal › Article

• A single chromosome assembly of Bacteroides fragilis strain BE1 from Illumina and MinION nanopore sequencing data

  Research output: Contribution to journal › Article

• Meta4 a web application for sharing and annotating metagenomic gene predictions using web services

  Research output: Non-textual form › Software

• Comparative transcriptome analysis of equine alveolar macrophages

  Research output: Contribution to journal › Article

• Robust statistical modeling improves sensitivity of high-throughput RNA structure probing experiments

  Research output: Contribution to journal › Article

• Caenorhabditis monodelphis sp. n.: defining 1 the stem morphology 2 and genomics of the genus Caenorhabditis

  Research output: Contribution to journal › Article

• MinION^TM nanopore sequencing of environmental metagenomes: a synthetic approach

  Research output: Contribution to journal › Article

• A review of bioinformatics tools for bio-prospecting from metagenomic sequence data

  Research output: Contribution to journal › Literature review

• A high resolution atlas of gene expression in the domestic sheep (Ovis aries)

  Research output: Contribution to journal › Article

• RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination

  Research output: Contribution to journal › Article

• Gene Duplication and Dosage Effects During The Early Emergence of C4 Photosynthesis in The Grass Genus Alloteropsis

  Research output: Contribution to journal › Article

• 1,25-dihydroxyvitamin D3 restrains CD4+ T cell priming ability of CD11c+ dendritic cells by upregulating expression of CD31

  Research output: Contribution to journal › Article