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A Software Interface Between the Narrative Language and Bio-PEPA

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http://www.sciencedirect.com/science/article/pii/S1571066113000200
Original languageEnglish
Pages (from-to)51-65
Number of pages15
JournalElectronic Proceedings in Theoretical Computer Science
Volume293
DOIs
Publication statusPublished - 2013

Abstract

We present a software tool for the automatic translation of models from the Narrative Language, a semi-formal language for biological modelling, into the Bio-PEPA process algebra. This provides biologists with an easy way to describe systems and at the same time gives them access to the simulation and analysis techniques provided by Bio-PEPA. We present details of the translation algorithm and its integration into existing software, and discuss ways in which this idea could be further explored.

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