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Design and Development of Software Tools for Bio-PEPA

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Original languageEnglish
Title of host publicationProceedings of the Winter Simulation Conference 2009
PublisherACM
Pages956-967
Number of pages12
ISBN (Electronic)978-1-4244-5771-7
ISBN (Print)978-1-4244-5770-0
DOIs
Publication statusPublished - 2009

Abstract

This paper surveys the design of software tools for the Bio-PEPA process algebra. Bio-PEPA is a high-level language for modelling biological systems such as metabolic pathways and other biochemical reaction networks. Through providing tools for this modelling language we hope to allow easier use of a range of simulators and model-checkers thereby freeing the modeller from the responsibility of developing a custom simulator for the problem of interest. Further, by providing mappings to a range of different analysis tools the Bio-PEPA language allows modellers to compare analysis results which have been computed using independent numerical analysers, which enhances the reliability and robustness of the results computed.

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