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Gateways to the FANTOM5 promoter level mammalian expression atlas

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  • Marina Lizio
  • Jayson Harshbarger
  • Hisashi Shimoji
  • Jessica Severin
  • Takeya Kasukawa
  • Serkan Sahin
  • Imad Abugessaisa
  • Shiro Fukuda
  • Fumi Hori
  • Sachi Ishikawa-Kato
  • Christopher J. Mungall
  • Erik Arner
  • J. Kenneth Baillie
  • Nicolas Bertin
  • Hidemasa Bono
  • Michiel de Hoon
  • Alexander D. Diehl
  • Emmanuel Dimont
  • Tom C. Freeman
  • Kaori Fujieda
  • Winston Hide
  • Rajaram Kaliyaperumal
  • Toshiaki Katayama
  • Timo Lassmann
  • Terrence F. Meehan
  • Koro Nishikata
  • Hiromasa Ono
  • Michael Rehli
  • Albin Sandelin
  • Erik A. Schultes
  • Peter A. C't Hoen
  • Zuotian Tatum
  • Mark Thompson
  • Tetsuro Toyoda
  • Derek W. Wright
  • Carsten O. Daub
  • Masayoshi Itoh
  • Piero Carninci
  • Yoshihide Hayashizaki
  • Alistair R. R. Forrest
  • Hideya Kawaji
  • FANTOM Consortium

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    Rights statement: © 2015 Lizio et al.; licensee BioMed Central. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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http://genomebiology.com/2015/16/1/22
Original languageEnglish
Article number22
Number of pages14
JournalGenome Biology
Volume16
DOIs
Publication statusPublished - 5 Jan 2015

Abstract

The FANTOM5 project investigates transcription initiation activities in more than 1,000 human and mouse primary cells, cell lines and tissues using CAGE. Based on manual curation of sample information and development of an ontology for sample classification, we assemble the resulting data into a centralized data resource (http://fantom.gsc.riken.jp/5/). This resource contains web-based tools and data-access points for the research community to search and extract data related to samples, genes, promoter activities, transcription factors and enhancers across the FANTOM5 atlas.

    Research areas

  • ANALYSIS GENE-EXPRESSION, CAP-ANALYSIS, TRANSCRIPTIONAL LANDSCAPE, FUNCTIONAL ANNOTATION, NATIONAL CENTER, HUMAN GENOME, RNA-SEQ, DATABASE, ONTOLOGIES, MOUSE

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