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poRe: an R package for the visualization and analysis of nanopore sequencing data

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    Rights statement: © The Author(s) 2014. Published by Oxford University Press. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

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http://bioinformatics.oxfordjournals.org/content/early/2014/08/29/bioinformatics.btu590
Original languageEnglish
Pages (from-to)114-115
Number of pages2
JournalBioinformatics
Volume31
Issue number1
Early online date29 Aug 2014
DOIs
Publication statusPublished - Jan 2015

Abstract

MOTIVATION: The Oxford Nanopore MinION device represents a unique sequencing technology. As a mobile sequencing device powered by the USB port of a laptop, the MinION has huge potential applications. To enable these applications, the bioinformatics community will need to design and build a suite of tools specifically for MinION data.

RESULTS: Here we present poRe, a package for R that enables users to manipulate, organize, summarise and visualize MinION nanopore sequencing data. As a package for R, poRe has been tested on Windows, Linux and MacOSX. Crucially, the Windows version allows users to analyse MinION data on the Windows laptop attached to the device Availability and implementation: poRe is released as a package for R at http://sourceforge.net/projects/rpore/. A tutorial and further information is available at https://sourceforge.net/p/rpore/wiki/Home/ CONTACT: mick.watson@roslin.ed.ac.uk SUPPLEMENTARY DATA: Further figures and information on the FAST5 data format are available in the supplementary data.

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