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Reproducible computational biology experiments with SED-ML-the Simulation Experiment Description Markup Language

Research output: Contribution to journalArticle

  • Dagmar Waltemath
  • Richard Adams
  • Frank T Bergmann
  • Michael Hucka
  • Fedor Kolpakov
  • Andrew K Miller
  • Ion I Moraru
  • David Nickerson
  • Sven Sahle
  • Jacky L Snoep
  • Nicolas Le Novère

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    Rights statement: © 2011 Waltemath et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Original languageEnglish
Article number198
JournalBMC Systems Biology
Publication statusPublished - 2011


The increasing use of computational simulation experiments to inform modern biological research creates new challenges to annotate, archive, share and reproduce such experiments. The recently published Minimum Information About a Simulation Experiment (MIASE) proposes a minimal set of information that should be provided to allow the reproduction of simulation experiments among users and software tools.

    Research areas

  • Computational Biology, Computer Simulation, Programming Languages, Reproducibility of Results, Software

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