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Reproducible computational biology experiments with SED-ML-the Simulation Experiment Description Markup Language

Research output: Contribution to journalArticle

  • Dagmar Waltemath
  • Richard Adams
  • Frank T Bergmann
  • Michael Hucka
  • Fedor Kolpakov
  • Andrew K Miller
  • Ion I Moraru
  • David Nickerson
  • Sven Sahle
  • Jacky L Snoep
  • Nicolas Le Novère

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    Rights statement: © 2011 Waltemath et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Original languageEnglish
Article number198
JournalBMC Systems Biology
Volume5
DOIs
Publication statusPublished - 2011

Abstract

The increasing use of computational simulation experiments to inform modern biological research creates new challenges to annotate, archive, share and reproduce such experiments. The recently published Minimum Information About a Simulation Experiment (MIASE) proposes a minimal set of information that should be provided to allow the reproduction of simulation experiments among users and software tools.

    Research areas

  • Computational Biology, Computer Simulation, Programming Languages, Reproducibility of Results, Software

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