- Alessio P. Buccino
- Cole L. Hurwitz
- Samuel Garcia
- Jeremy Magland
- Joshua H. Siegle
- Roger Hurwitz
- Matthias H. Hennig
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Accepted author manuscript, 6.51 MB, PDF document
Licence: Creative Commons: Attribution (CC-BY)
- Download as Adobe PDF
Final published version, 11.6 MB, PDF document
Licence: Creative Commons: Attribution (CC-BY)
Original language | English |
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Article number | e61834 |
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Number of pages | 24 |
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Journal | eLIFE |
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Volume | 9 |
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Early online date | 10 Nov 2020 |
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DOIs | |
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Publication status | Published - 30 Nov 2020 |
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Much development has been directed towards improving the performance and automation of spike sorting. This continuous development, while essential, has contributed to an over-saturation of new, incompatible tools that hinders rigorous benchmarking and complicates reproducible analysis. To address these limitations, we developed SpikeInterface, a Python framework designed to unify preexisting spike sorting technologies into a single codebase and to facilitate straightforward comparison and adoption of different approaches. With a few lines of code, researchers can reproducibly run, compare, and benchmark most modern spike sorting algorithms; pre-process, post-process, and visualize extracellular datasets; validate, curate, and export sorting outputs; and more. In this paper, we provide an overview of SpikeInterface and, with applications to real and simulated datasets, demonstrate how it can be utilized to reduce the burden of manual curation and to more comprehensively benchmark automated spike sorters.
ID: 178423124