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xiNET: Cross-link network maps with residue resolution: Cross-link network maps with residue resolution

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Original languageEnglish
Pages (from-to)1137-1147
Number of pages11
JournalMolecular and Cellular Proteomics
Volume14
Issue number4
DOIs
Publication statusPublished - 1 Jan 2015

Abstract

xiNET is a visualization tool for exploring cross-linking/mass spectrometry results. The interactive maps of the cross-link network that it generates are a type of nodelink diagram. In these maps xiNET displays: (1) residue resolution positional information including linkage sites and linked peptides; (2) all types of cross-linking reaction product; (3) ambiguous results; and, (4) additional sequence information such as domains. xiNET runs in a browser and exports vector graphics which can be edited in common drawing packages to create publication quality figures. Availability: xiNET is open source, released under the Apache version 2 license. Results can be viewed by uploading data to http://crosslinkviewer.org/ or by downloading the software from http://github.com/colin-combe/crosslink-viewer and running it locally.

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